Basic Information
Locus ID:
Pt_Chr0305060
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RhoGAP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 163632903 | 163644389 | + | Pt_Chr0305060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 83,623.91 Da | 50.30 | 81.33 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 18 | 124 | 3.38105E-10 | - |
| CDD | cd00159 | RhoGAP | 171 | 310 | 2.00623E-29 | - |
| Pfam | PF00169 | PH domain | 17 | 128 | 1.4E-10 | IPR001849 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 566 | 646 | 2.3E-19 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 171 | 315 | 1.7E-31 | IPR000198 |
| SUPERFAMILY | SSF50729 | PH domain-like | 13 | 134 | 1.64E-16 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 171 | 364 | 1.0E-32 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 144 | 364 | 9.9E-41 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 7 | 130 | 1.6E-14 | IPR011993 |
| SMART | SM00233 | PH_update | 16 | 131 | 2.5E-14 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 168 | 359 | 2.6E-24 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 15 | 129 | 15.6623 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 162 | 362 | 29.638655 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 553 | - | - |
| Coils | Coil | Coil | 559 | 579 | - | - |
| Coils | Coil | Coil | 708 | 728 | - | - |
| Coils | Coil | Coil | 615 | 649 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_051213952.1 | rho GTPase-activating protein 7-like isoform X3 [Lolium perenne] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6C3S9 | Rho GTPase-activating protein 7-like OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology