Basic Information
Locus ID:
Pt_Chr0305056
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 163533211 | 163537803 | + | Pt_Chr0305056 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 67,671.87 Da | 52.93 | 80.12 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03527 | RuBisCO_small | 486 | 595 | 1.64779E-56 | IPR000894 |
| Pfam | PF12338 | Ribulose-1,5-bisphosphate carboxylase small subunit | 426 | 462 | 1.1E-7 | IPR024680 |
| Pfam | PF00101 | Ribulose bisphosphate carboxylase, small chain | 488 | 595 | 2.7E-37 | IPR000894 |
| SUPERFAMILY | SSF81383 | F-box domain | 45 | 100 | 1.96E-8 | IPR036047 |
| SUPERFAMILY | SSF55239 | RuBisCO, small subunit | 477 | 597 | 9.95E-55 | IPR036385 |
| Gene3D | G3DSA:3.30.190.10 | Ribulose bisphosphate carboxylase, small subunit | 477 | 604 | 9.6E-60 | IPR036385 |
| SMART | SM00256 | fbox_2 | 46 | 87 | 5.6E-6 | IPR001810 |
| SMART | SM00961 | RuBisCO_small_2_a | 487 | 595 | 2.3E-39 | IPR000894 |
| PRINTS | PR00152 | RuBisCO small subunit signature | 465 | 483 | 1.1E-64 | IPR024681 |
| PRINTS | PR00152 | RuBisCO small subunit signature | 439 | 456 | 1.1E-64 | IPR024681 |
| PRINTS | PR00152 | RuBisCO small subunit signature | 514 | 529 | 1.1E-64 | IPR024681 |
| PRINTS | PR00152 | RuBisCO small subunit signature | 569 | 595 | 1.1E-64 | IPR024681 |
| PRINTS | PR00152 | RuBisCO small subunit signature | 486 | 512 | 1.1E-64 | IPR024681 |
| PRINTS | PR00152 | RuBisCO small subunit signature | 535 | 564 | 1.1E-64 | IPR024681 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko00630 (Glyoxylate and dicarboxylate metabolism)
map00630 (Glyoxylate and dicarboxylate metabolism)
ko00710 (Carbon fixation by Calvin cycle)
map00710 (Carbon fixation by Calvin cycle)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67090.1 | ribulose bisphosphate carboxylase small chain 1A. | 0 |
| RefSeq | XP_051213963.1 | uncharacterized protein LOC127331800 [Lolium perenne] | 0 |
| Q40004 | Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Hordeum vulgare OX=4513 GN=RBCS PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6QJS6 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology