Basic Information
Locus ID:
Pt_Chr0304865
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 159308311 | 159313802 | - | Pt_Chr0304865 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 72,341.15 Da | 42.56 | 88.42 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 137 | 466 | 1.54743E-122 | - |
| Pfam | PF00069 | Protein kinase domain | 251 | 467 | 1.2E-63 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 495 | 649 | 1.69E-18 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 131 | 494 | 6.81E-78 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 121 | 186 | 3.5E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 295 | 487 | 1.9E-60 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 488 | 649 | 3.7E-16 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 241 | 294 | 1.3E-13 | - |
| SMART | SM00220 | serkin_6 | 138 | 467 | 7.9E-94 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 138 | 467 | 48.498714 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 509 | 544 | 8.766953 | IPR002048 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 144 | 170 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 329 | 341 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41140.1 | CDPK-related kinase 1. Encodes CDPK-related kinase 1 (CRK1). | 0 |
| RefSeq | XP_047062736.1 | calcium/calmodulin-dependent serine/threonine-protein kinase 1-like [Lolium rigidum] | 0 |
| Q10KY3 | Calcium/calmodulin-dependent serine/threonine-protein kinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CAMK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6C1R9 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology