Basic Information
Locus ID:
Pt_Chr0304607
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
protein modification by small protein conjugation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 151522787 | 151532107 | + | Pt_Chr0304607 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 131,764.36 Da | 59.24 | 66.25 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 681 | 804 | 1.57601E-41 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 683 | 802 | 4.6E-23 | IPR000608 |
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 118 | 439 | 3.2E-72 | IPR000490 |
| Pfam | PF07983 | X8 domain | 456 | 526 | 1.2E-14 | IPR012946 |
| SUPERFAMILY | SSF54495 | UBC-like | 667 | 807 | 6.52E-38 | IPR016135 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 118 | 439 | 2.58E-75 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 117 | 446 | 2.8E-108 | - |
| Gene3D | G3DSA:1.20.58.1040 | - | 452 | 545 | 1.2E-6 | - |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 671 | 809 | 1.8E-37 | IPR016135 |
| SMART | SM00768 | X8_cls | 455 | 539 | 2.0E-37 | IPR012946 |
| SMART | SM00212 | ubc_7 | 681 | 809 | 1.6E-34 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 678 | 809 | 19.878132 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 868 | 882 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 884 | 1002 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 868 | 1085 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1014 | 1080 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 640 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13560.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_047064869.1 | glucan endo-1,3-beta-glucosidase 4-like [Lolium rigidum] | 0 |
| Q94CD8 | Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 PE=2 SV=1 | 0 | |
| TrEMBL | M8CLZ1 | Glucan endo-1,3-beta-glucosidase 4 OS=Aegilops tauschii OX=37682 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology