Basic Information
Locus ID:
Pt_Chr0304471
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 146821930 | 146825573 | - | Pt_Chr0304471 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 61,293.26 Da | 36.62 | 82.93 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 447 | 509 | 3.29725E-17 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 69 | 327 | 1.76769E-139 | - |
| Pfam | PF13499 | EF-hand domain pair | 376 | 434 | 4.6E-7 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 70 | 328 | 6.5E-76 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 446 | 509 | 2.5E-14 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 67 | 340 | 8.77E-88 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 356 | 533 | 6.03E-42 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 337 | 511 | 3.1E-49 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 73 | 155 | 2.9E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 156 | 336 | 4.1E-59 | - |
| SMART | SM00054 | efh_1 | 375 | 403 | 0.024 | IPR002048 |
| SMART | SM00054 | efh_1 | 483 | 511 | 1.5E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 411 | 439 | 4.3 | IPR002048 |
| SMART | SM00220 | serkin_6 | 70 | 328 | 1.1E-99 | IPR000719 |
| SMART | SM00054 | efh_1 | 447 | 475 | 0.91 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 443 | 478 | 11.138062 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 371 | 406 | 12.811786 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 479 | 514 | 15.182896 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 70 | 328 | 49.389156 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 407 | 442 | 9.018011 | IPR002048 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 190 | 202 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 76 | 99 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 492 | 504 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 456 | 468 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 420 | 432 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 36 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 0 |
| RefSeq | XP_044965282.1 | calcium-dependent protein kinase 20 [Hordeum vulgare subsp. vulgare] | 0 |
| Q84SL0 | Calcium-dependent protein kinase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8I6X440 | Calcium-dependent protein kinase 30 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology