Basic Information
Locus ID:
Pt_Chr0304253
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 138799457 | 138802928 | - | Pt_Chr0304253 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 58,600.34 Da | 42.42 | 76.91 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 163 | 256 | 9.1E-10 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 34 | 130 | 5.7E-17 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 382 | 495 | 5.96E-12 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 381 | 485 | 1.8E-16 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 323 | 380 | 1.7E-5 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 26 | 134 | 3.1E-21 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 151 | 259 | 1.8E-19 | IPR038408 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 29 | 134 | 19.376471 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 151 | 259 | 17.837614 | IPR002902 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 522 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23280.3 | - | 0 |
| RefSeq | XP_047062111.1 | putative cysteine-rich receptor-like protein kinase 20 [Lolium rigidum] | 0 |
| Q0D5R3 | Cysteine-rich receptor-like protein kinase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CRK6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D5V217 | Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS2080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.3243, BH03.3430, CH03.3635, CH03.3636 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_7AG0570270, gene-QOZ80_7AG0570320 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0139040.1, HORVU.MOREX.r3.7HG0638110.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040820, gene-QYE76_040848 |
| Poaceae | Oryza coarctata | 2 | Oco13G009240, Oco14G009630 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g35140.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G301000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304253 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G005260, Chr27G012000 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G1046700, Tel2E01G404800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG028890, gene_TRIDC2BG032550 |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G217200.1, TraesCS2A02G562800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb323230_P001, Zm00001eb323240_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-819 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6572 |