Basic Information
Locus ID:
Pt_Chr0304235
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 138368398 | 138379672 | - | Pt_Chr0304235 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 123,271.32 Da | 41.26 | 87.64 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 338 | 605 | 5.47144E-92 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 335 | 605 | 1.8E-47 | IPR001245 |
| Pfam | PF01657 | Salt stress response/antifungal | 20 | 104 | 6.8E-11 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 655 | 733 | 4.0E-7 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 782 | 870 | 4.5E-6 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 147 | 239 | 4.8E-12 | IPR002902 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 975 | 1103 | 3.0E-23 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 957 | 1103 | 6.74E-41 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 315 | 630 | 2.97E-81 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 292 | 407 | 1.8E-36 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 947 | 1049 | 3.7E-35 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1050 | 1103 | 1.4E-9 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 17 | 124 | 1.0E-13 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 772 | 872 | 1.9E-9 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 408 | 618 | 1.2E-57 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 138 | 241 | 2.5E-18 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 651 | 756 | 5.0E-8 | IPR038408 |
| SMART | SM00220 | serkin_6 | 332 | 605 | 2.1E-31 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 15 | 124 | 13.682699 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 650 | 753 | 10.994226 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 771 | 873 | 10.767923 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 973 | 1103 | 23.60874 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 130 | 242 | 15.429754 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 332 | 612 | 37.544865 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 453 | 465 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1090 | 1102 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23280.2 | - | 0 |
| RefSeq | XP_047067380.1 | cysteine-rich receptor-like protein kinase 44 isoform X1 [Lolium rigidum] | 0 |
| O65479 | Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=CRK20 PE=2 SV=2 | 0 | |
| TrEMBL | B9FXM9 | Cysteine-rich receptor-like protein kinase 25 OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_24561 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.3238, BH03.3419, BH03.3423, BH03.3425 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0570310, gene-QOZ80_7BG0602060 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0139070.1 |
| Poaceae | Oryza coarctata | 2 | Oco13G009180, Oco14G009600 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G300500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304235 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G005290, Chr27G011970 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G406000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG028920, gene_TRIDC2AG028930 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G217600.1, TraesCS2B02G243100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb106320_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-822 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6568 |