Basic Information
Locus ID:
Pt_Chr0304117
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
chromatin remodeling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 133642363 | 133655253 | - | Pt_Chr0304117 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 251,949.45 Da | 51.00 | 73.44 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 78 | 119 | 1.24408E-21 | - |
| CDD | cd18660 | CD1_tandem | 543 | 577 | 1.29326E-13 | - |
| CDD | cd18659 | CD2_tandem | 591 | 645 | 1.99685E-15 | - |
| CDD | cd18793 | SF2_C_SNF | 997 | 1124 | 1.60343E-52 | - |
| CDD | cd11660 | SANT_TRF | 1718 | 1762 | 5.08358E-9 | - |
| Pfam | PF00628 | PHD-finger | 78 | 121 | 1.9E-8 | IPR019787 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 595 | 645 | 4.1E-8 | IPR023780 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 701 | 976 | 1.9E-59 | IPR000330 |
| Pfam | PF06465 | Domain of Unknown Function (DUF1087) | 1284 | 1335 | 1.3E-9 | IPR009463 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1001 | 1113 | 1.5E-17 | IPR001650 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 584 | 645 | 1.9E-10 | IPR016197 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 538 | 582 | 1.54E-9 | IPR016197 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 909 | 1169 | 1.92E-62 | IPR027417 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 1713 | 1764 | 4.66E-8 | IPR009057 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 72 | 125 | 8.42E-15 | IPR011011 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 670 | 907 | 1.09E-56 | IPR027417 |
| Gene3D | G3DSA:2.40.50.40 | - | 595 | 645 | 9.5E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 122 | 4.6E-17 | IPR013083 |
| Gene3D | G3DSA:2.40.50.40 | - | 506 | 580 | 2.2E-10 | - |
| Gene3D | G3DSA:1.10.10.60 | - | 1680 | 1789 | 2.1E-8 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 674 | 916 | 1.3E-183 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 917 | 1144 | 1.3E-183 | IPR027417 |
| SMART | SM00298 | chromo_7 | 353 | 581 | 3.2E-10 | IPR000953 |
| SMART | SM00490 | helicmild6 | 1028 | 1113 | 5.6E-22 | IPR001650 |
| SMART | SM00249 | PHD_3 | 77 | 120 | 1.3E-12 | IPR001965 |
| SMART | SM00298 | chromo_7 | 591 | 651 | 6.8E-6 | IPR000953 |
| SMART | SM01147 | DUF1087_2 | 1277 | 1342 | 2.0E-20 | IPR009463 |
| SMART | SM00487 | ultradead3 | 679 | 883 | 2.4E-37 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 695 | 872 | 23.64975 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1002 | 1161 | 16.982151 | IPR001650 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 1710 | 1762 | 6.44629 | IPR001005 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 75 | 122 | 9.9617 | IPR019787 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 593 | 645 | 8.593601 | IPR000953 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 520 | 579 | 9.8606 | IPR000953 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 78 | 119 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1523 | 1549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2015 | 2060 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2193 | 2207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1421 | 1446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2129 | 2262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2212 | 2262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2044 | 2060 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1432 | 1446 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G44800.1 | chromatin remodeling 4. | 0 |
| RefSeq | XP_047070581.1 | protein CHROMATIN REMODELING 4 [Lolium rigidum] | 0 |
| F4KBP5 | Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana OX=3702 GN=CHR4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453BG16 | Protein CHROMATIN REMODELING 4 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20920 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_6170, gene_6171 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030129 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g163270 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16043, Sbi_jg56949 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24706 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013711 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl71828, Sgl71829, Sgl75394 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000007979, gene:ENSEOMG00000036380 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0016160, CQ.Regalona.r1.7BG0020010 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30079060 |
| Apiaceae | Apium graveolens | 3 | Ag6G01210, Ag6G01213, Ag7G01102 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G012720, scaffold000767G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711432, gene-LOC103713520 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1054.V1.1, AsparagusV1_03.1055.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G28642 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G44800.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000738m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g09650.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g016800.2N, BniB08g006390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1410 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1572 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g03500, gene.Cymno13g03520 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0280s00012.v1.0, Dusal.0357s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g20990 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 5 | nbisL1-mrna-3062, nbisL1-mrna-3063, nbisL1-mrna-3064 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.376 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012913 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G24837, Lb4G24843, Lb4G24844 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.3062, BH03.3235, BH03.3237, CH03.3433, Contig2801.2 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0143700.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041223 |
| Poaceae | Oryza coarctata | 2 | Oco13G007840, Oco14G008360 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G284100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304117 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G006020, Chr24G007750, Chr27G011240, Chr28G007090 |
| Poaceae | Zea mays | 1 | Zm00001eb105480_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-970 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6469 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.235, evm.TU.LG04.517 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g08760 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1011 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13480 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10871 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-9244, nbisL1-mrna-9245 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.276 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004176 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3668 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7694 |
| Salicaceae | Populus euphratica | 3 | populus_peu03372, populus_peu34221, populus_peu34222 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621471 |
| Solanaceae | Solanum chilense | 1 | SOLCI005700300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011005 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.5089_chr03_-, gene_16585 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2009 |
| Zosteraceae | Zostera marina | 1 | Zosma05g20100.v3.1 |