Basic Information
Locus ID:
Pt_Chr0304034
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 128107767 | 128117296 | - | Pt_Chr0304034 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 127,451.55 Da | 49.40 | 68.78 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 169 | 264 | 6.57716E-43 | - |
| Pfam | PF00564 | PB1 domain | 182 | 265 | 3.2E-18 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 937 | 1117 | 1.9E-37 | IPR001245 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 181 | 270 | 1.31E-19 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 926 | 1119 | 1.07E-53 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 928 | 1022 | 4.0E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1023 | 1127 | 1.4E-24 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 184 | 267 | 2.4E-13 | - |
| SMART | SM00220 | serkin_6 | 935 | 1149 | 1.5E-21 | IPR000719 |
| SMART | SM00666 | PB1_new | 180 | 267 | 4.9E-31 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 935 | 1154 | 31.862995 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 941 | 966 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1059 | 1071 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 133 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79570.4 | - | 0 |
| RefSeq | XP_051215861.1 | uncharacterized protein LOC127333524 isoform X1 [Lolium perenne] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2DLT2 | Protein kinase domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100828846 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology