Basic Information
Locus ID:
Pt_Chr0303820
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 112909980 | 112915129 | - | Pt_Chr0303820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 46,475.04 Da | 40.89 | 97.03 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 20 | 56 | 8.4E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 69 | 8.24E-12 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 142 | 341 | 2.12E-8 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 64 | 3.0E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 98 | 404 | 2.0E-10 | IPR032675 |
| SMART | SM00256 | fbox_2 | 23 | 62 | 5.3E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 17 | 53 | 10.133335 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02910.2 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_047066834.1 | MEIOTIC F-BOX protein MOF-like [Lolium rigidum] | 0 |
| Q7X7A4 | MEIOTIC F-BOX protein MOF OS=Oryza sativa subsp. japonica OX=39947 GN=MOF PE=1 SV=2 | 0 | |
| TrEMBL | A0A1E5W289 | F-box domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0007521 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology