Basic Information
Locus ID:
Pt_Chr0303743
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Bromo adjacent homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 109759445 | 109766897 | + | Pt_Chr0303743 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 32,194.11 Da | 69.48 | 53.07 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04714 | BAH_BAHCC1 | 89 | 227 | 1.00148E-55 | - |
| Pfam | PF00628 | PHD-finger | 211 | 259 | 3.8E-10 | IPR019787 |
| Pfam | PF01426 | BAH domain | 92 | 206 | 4.2E-22 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 201 | 262 | 1.57E-18 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 67 | 201 | 1.7E-28 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 202 | 275 | 1.8E-20 | IPR013083 |
| SMART | SM00439 | BAH_4 | 90 | 207 | 9.8E-38 | IPR001025 |
| SMART | SM00249 | PHD_3 | 211 | 258 | 2.8E-9 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 209 | 260 | 9.445499 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 90 | 207 | 22.442148 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 212 | 257 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 287 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_051206987.1 | chromatin remodeling protein EBS-like [Lolium perenne] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2X0S5H1 | Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS2375 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology