Basic Information
Locus ID:
Pt_Chr0303694
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 107736853 | 107741194 | + | Pt_Chr0303694 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 45,492.62 Da | 36.39 | 90.11 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 199 | 229 | 1.3E-4 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 14 | 76 | 5.9E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 83 | 179 | 8.1E-18 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 15 | 251 | 6.22E-46 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 300 | 360 | 1.59E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 8 | 141 | 5.1E-32 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 292 | 369 | 2.1E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 145 | 256 | 5.8E-20 | IPR036770 |
| SMART | SM00248 | ANK_2a | 78 | 107 | 2.6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 154 | 183 | 4.3E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 198 | 227 | 0.0034 | IPR002110 |
| SMART | SM00248 | ANK_2a | 112 | 143 | 2.1 | IPR002110 |
| SMART | SM00248 | ANK_2a | 45 | 74 | 1.4E-6 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 45 | 76 | 13.495747 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 154 | 186 | 10.55262 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 154 | 179 | 9.860947 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 198 | 230 | 11.727859 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 306 | 355 | 9.996021 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 45 | 77 | 14.39886 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 112 | 133 | 9.75132 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 112 | 133 | 9.728291 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 198 | 224 | 11.373236 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 321 | 330 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 214 | 228 | 8.2E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 155 | 170 | 8.2E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_051197901.1 | probable E3 ubiquitin-protein ligase XBOS36 isoform X2 [Lolium perenne] | 0 |
| Q4JHE0 | Probable E3 ubiquitin-protein ligase XBOS36 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS36 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6I5U8 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology