Basic Information
Locus ID:
Pt_Chr0303579
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 103800348 | 103812561 | - | Pt_Chr0303579 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 126,424.76 Da | 39.69 | 79.08 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 197 | 485 | 4.84366E-127 | - |
| CDD | cd00121 | MATH | 56 | 179 | 4.30034E-37 | IPR002083 |
| Pfam | PF00917 | MATH domain | 61 | 181 | 3.0E-17 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 584 | 836 | 7.1E-74 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 199 | 415 | 3.1E-28 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 846 | 1057 | 8.1E-54 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 194 | 511 | 1.04E-69 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 56 | 189 | 4.58E-39 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 645 | 760 | 6.6E-41 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 196 | 484 | 1.3E-57 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 54 | 195 | 5.8E-50 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 762 | 859 | 2.6E-26 | - |
| SMART | SM00061 | math_3 | 56 | 160 | 5.8E-18 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 199 | 483 | 23.094149 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 54 | 179 | 36.116188 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 200 | 215 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| Coils | Coil | Coil | 496 | 523 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_047069444.1 | ubiquitin C-terminal hydrolase 12-like [Lolium rigidum] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6AYN8 | ubiquitinyl hydrolase 1 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology