Basic Information
Locus ID:
Pt_Chr0303466
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
PFU (PLAA family ubiquitin binding)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 98889206 | 98899891 | - | Pt_Chr0303466 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 86,583.24 Da | 32.86 | 91.87 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 49 | 328 | 7.26379E-59 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 141 | 174 | 0.02 | IPR001680 |
| Pfam | PF08324 | PUL domain | 522 | 787 | 2.2E-54 | IPR013535 |
| Pfam | PF00400 | WD domain, G-beta repeat | 254 | 291 | 1.4E-4 | IPR001680 |
| Pfam | PF09070 | PFU (PLAA family ubiquitin binding) | 375 | 484 | 9.6E-35 | IPR015155 |
| Pfam | PF00400 | WD domain, G-beta repeat | 180 | 212 | 0.28 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 52 | 83 | 0.055 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 295 | 328 | 7.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 215 | 250 | 5.3E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 46 | 343 | 5.23E-56 | IPR036322 |
| Gene3D | G3DSA:1.25.10.10 | - | 520 | 791 | 5.0E-66 | IPR011989 |
| Gene3D | G3DSA:2.130.10.10 | - | 43 | 348 | 3.3E-68 | IPR015943 |
| Gene3D | G3DSA:3.10.20.870 | - | 419 | 492 | 1.6E-25 | IPR038122 |
| SMART | SM00320 | WD40_4 | 292 | 329 | 4.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 251 | 1.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 139 | 173 | 4.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 253 | 291 | 1.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 92 | 136 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 46 | 84 | 0.0014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 212 | 0.0044 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 220 | 260 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 260 | 291 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 220 | 250 | 8.702878 | - |
| ProSiteProfiles | PS51396 | PUL domain profile. | 520 | 791 | 28.373762 | IPR013535 |
| ProSiteProfiles | PS51394 | PFU domain profile. | 395 | 491 | 33.439056 | IPR015155 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 260 | 291 | 9.282875 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 212 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 99 | 145 | 9.840087 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 53 | 83 | 8.703868 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 123 | 137 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 123 | 137 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 238 | 252 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 1.5E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18860.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_044457106.1 | phospholipase A-2-activating protein-like [Triticum aestivum] | 0 |
| P54319 | Phospholipase A-2-activating protein OS=Rattus norvegicus OX=10116 GN=Plaa PE=1 SV=3 | 0 | |
| TrEMBL | A0A453BNR2 | Phospholipase A-2-activating protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28741 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21622 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010291 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g144170, BVRB_9g217900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12482, Sbi_jg45834 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20193 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022412 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00010, Sgl05076 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018164, gene:ENSEOMG00000036625 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7BG0008060, CQ.Regalona.r1.9AG0016470 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30113810 |
| Apiaceae | Apium graveolens | 1 | Ag9G00113 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G019770, COCNU_06G019780 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720793, gene-LOC103721263 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3102.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G33535 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G18860.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020129m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g16960.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g045490.2N, BniB07g030200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0048 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0054 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g00530 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0103s00015.v1.0, Dusal.0103s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g30790 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5681 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.95 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035638 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17221, Lb3G17231 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.148, BH03.180, CH03.237 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0554340, gene-QOZ80_7BG0585410 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0154580.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041942 |
| Poaceae | Oryza coarctata | 2 | Oco13G000820, Oco14G000880 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g03160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G021700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0303447, Pt_Chr0303466 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G005180, Chr24G002030, Chr28G000530 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G471800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG038060, gene_TRIDC2BG040020 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G266700.1, TraesCS2B02G275700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb299230_P005 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35844 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4702 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.Contig29.2, evm.TU.LG08.1826, evm.TU.LG22.36 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g27960 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.247 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4956 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18724 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9881 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.803 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005978 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14729 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1286 |
| Salicaceae | Populus euphratica | 3 | populus_peu08910, populus_peu36437, populus_peu36441 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599142 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007899 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7815 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0516 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01730.v3.1 |