Basic Information
Locus ID:
Pt_Chr0303363
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 94507742 | 94509827 | - | Pt_Chr0303363 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 17,481.52 Da | 29.95 | 78.70 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 87 | 156 | 9.66776E-33 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 86 | 155 | 2.5E-28 | IPR020189 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 16 | 94 | 4.46E-28 | IPR008991 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 87 | 157 | 2.68E-25 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 87 | 161 | 1.4E-32 | - |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 86 | 4.5E-44 | IPR014722 |
| SMART | SM01376 | eIF_5a_2 | 86 | 155 | 6.0E-33 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 18 | 154 | 6.8E-41 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 158 | 1.2E-66 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 51 | 58 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69410.1 | eukaryotic elongation factor 5A-3. Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410. | 0 |
| RefSeq | XP_047062942.1 | eukaryotic translation initiation factor 5A [Lolium rigidum] | 0 |
| Q9AXQ6 | Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1 | 0 | |
| TrEMBL | Q3S4I1 | Eukaryotic translation initiation factor 5A OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS2580 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology