Basic Information
Locus ID:
Pt_Chr0303354
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
XH domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 94200177 | 94202501 | + | Pt_Chr0303354 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 75,293.57 Da | 55.59 | 85.63 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03469 | XH domain | 534 | 661 | 6.3E-49 | IPR005379 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| Coils | Coil | Coil | 272 | 299 | - | - |
| Coils | Coil | Coil | 335 | 355 | - | - |
| Coils | Coil | Coil | 441 | 461 | - | - |
| Coils | Coil | Coil | 367 | 387 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12550.5 | - | 0 |
| RefSeq | XP_051216459.1 | factor of DNA methylation 1-like isoform X1 [Lolium perenne] | 0 |
| Q9LHB1 | Factor of DNA methylation 3 OS=Arabidopsis thaliana OX=3702 GN=FDM3 PE=4 SV=1 | 0 | |
| TrEMBL | A0A453PLM9 | XH domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1299, jg19331 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21114 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011966 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g209230 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41517, Sbi_jg48645 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27837 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019103 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl79218, Sgl81678 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000016434, gene:ENSEOMG00000038570 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0009460, CQ.Regalona.r1.9BG0014230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30089530 |
| Apiaceae | Apium graveolens | 2 | Ag5G00020, Ag6G01940 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G002800, COCNU_14G003970 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702712, gene-LOC103709528 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2533.V1.1, AsparagusV1_05.1717.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G42370.1, AT3G58110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005785m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g04610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g055230.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2774 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G2885, Cgl02G2886 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g01360 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g18460 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4326 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1228, evm.TU.LG04.1743 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004607 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19434 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1906, BH06.1752, CH06.1945 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0542120, gene-QOZ80_6BG0495360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0709690.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_049148, gene-QYE76_049622, gene-QYE76_057186 |
| Poaceae | Oryza coarctata | 3 | Oco11G010460, Oco12G010570, Oco13G000520 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g34710.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G156800 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0205828, Pt_Chr0303354, Pt_Chr0303401, Pt_Chr0400141 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G028550, Chr05G006230, Chr10G015830, Chr10G015840 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G573400, Tel7E01G645700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG054850 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G077500.1, TraesCS7A02G346100.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb204940_P001, Zm00001eb238760_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10278, nbis-gene-19338 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30665, Zma_g32897 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.702, evm.TU.LG26.325 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g09750 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_5_RagTag.1294, evm.TU.Scaffold_9_RagTag.1191 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11776, nbisL1-mrna-11780, nbisL1-mrna-20989 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16667, nbisL1-mrna-8644 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11158, nbisL1-mrna-18687, nbisL1-mrna-18688 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000003l.274, add.evm.TU.utg000006l.296 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009130, Maker00014091 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17246, nbisL1-mrna-20655 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4884 |
| Salicaceae | Populus euphratica | 2 | populus_peu16719, populus_peu18804 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132620374 |
| Solanaceae | Solanum chilense | 1 | SOLCI007276200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026038 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.7050_chr04_-, gene_18032 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0908, TC02G1465 |
| Zosteraceae | Zostera marina | 1 | Zosma01g07890.v3.1 |