Basic Information
Locus ID:
Pt_Chr0303136
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 85022351 | 85028581 | - | Pt_Chr0303136 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.48 | 97,821.90 Da | 41.66 | 96.93 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 323 | 361 | 0.0031 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 186 | 243 | 1.4E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 393 | 428 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF52058 | L domain-like | 424 | 746 | 1.07E-11 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 149 | 439 | 6.04E-47 | IPR036322 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 585 | 765 | 8.2E-9 | IPR032675 |
| Gene3D | G3DSA:2.130.10.10 | - | 98 | 431 | 7.3E-92 | IPR015943 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 464 | 584 | 6.0E-9 | IPR032675 |
| SMART | SM00320 | WD40_4 | 179 | 218 | 1.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 221 | 259 | 0.56 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 361 | 9.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 428 | 7.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 265 | 308 | 9.9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 396 | 429 | 10.653776 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 186 | 218 | 8.808332 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 186 | 227 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 326 | 370 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 396 | 437 | 12.947979 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 348 | 362 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 415 | 429 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_051219125.1 | cell division cycle 20.2, cofactor of APC complex-like [Lolium perenne] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D5UKQ7 | Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS4393 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0303136, Pt_Chr0303187 |