Basic Information
Locus ID:
Pt_Chr0303106
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 84082690 | 84086422 | + | Pt_Chr0303106 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 72,705.18 Da | 61.86 | 83.29 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 292 | 363 | 8.4E-17 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 403 | 563 | 1.5E-12 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 290 | 364 | 3.18E-20 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 441 | 600 | 2.2E-12 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 289 | 362 | 1.9E-19 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 295 | 358 | 1.9E-14 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 291 | 365 | 24.292059 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 638 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66160.1 | CYS, MET, PRO, and GLY protein 1. | 0 |
| RefSeq | XP_047064425.1 | uncharacterized protein LOC124672199 [Lolium rigidum] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453BTY3 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH06.2661, AH09.704, BH05.2377, BH09.723, CH07.956, CH09.778 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0321360, gene-QOZ80_4BG0357080 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0160850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043508 |
| Poaceae | Oryza coarctata | 1 | Oco07G003540 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g30470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G057300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0303088, Pt_Chr0303106 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G015350, Chr26G004500 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G499700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG040240, gene_TRIDC2BG043280 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G278300.1, TraesCS2B02G295900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb420580_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44969 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19519 |