Basic Information
Locus ID:
Pt_Chr0303081
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Glycosyl hydrolases family 18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 83009513 | 83011234 | + | Pt_Chr0303081 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 48,641.86 Da | 43.71 | 91.27 | 0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 44 | 383 | 1.5E-48 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 280 | 354 | 1.13E-11 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 42 | 386 | 1.79E-50 | IPR017853 |
| Gene3D | G3DSA:3.10.50.10 | - | 279 | 354 | 6.8E-70 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 59 | 383 | 6.8E-70 | - |
| SMART | SM00636 | 2g34 | 41 | 383 | 3.9E-58 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 40 | 400 | 46.642677 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_047064421.1 | nod factor hydrolase protein 1-like [Lolium rigidum] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6AYG4 | GH18 domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology