Basic Information
Locus ID:
Pt_Chr0303060
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 82491274 | 82498031 | + | Pt_Chr0303060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 44,466.91 Da | 45.16 | 72.54 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 27 | 271 | 1.92567E-161 | - |
| Pfam | PF00850 | Histone deacetylase domain | 41 | 271 | 9.9E-65 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 22 | 326 | 5.28E-94 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 270 | 339 | 2.7E-9 | IPR037138 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 20 | 269 | 8.6E-89 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 268 | 396 | 1.5E-17 | IPR003084 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 11 | 271 | 2.8E-134 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 182 | 197 | 1.1E-18 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 150 | 173 | 1.1E-18 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 128 | 148 | 5.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 76 | 94 | 5.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 43 | 60 | 5.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 228 | 241 | 5.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 245 | 263 | 5.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 169 | 185 | 5.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 107 | 124 | 5.5E-60 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 398 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_037446876.1 | histone deacetylase 6-like [Triticum dicoccoides] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | M7YME0 | Histone deacetylase OS=Triticum urartu OX=4572 GN=TRIUR3_32991 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology