Basic Information
Locus ID:
Pt_Chr0303037
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 81546502 | 81547897 | + | Pt_Chr0303037 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 40,878.14 Da | 58.69 | 79.80 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 326 | 366 | 2.5E-7 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 324 | 371 | 8.63E-10 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 117 | 234 | 2.35E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 50 | 106 | 1.66E-5 | IPR036047 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 70 | 255 | 1.3E-15 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 315 | 371 | 1.8E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 324 | 366 | 10.902658 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_044332473.1 | F-box protein At5g50450-like [Triticum aestivum] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D6RNU5 | Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS2811 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology