Basic Information
Locus ID:
Pt_Chr0302950
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
AFB3
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 78271599 | 78275930 | - | Pt_Chr0302950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 83,054.23 Da | 55.67 | 89.11 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 240 | 286 | 3.2E-23 | IPR041101 |
| Pfam | PF18511 | F-box | 180 | 220 | 4.0E-16 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 242 | 710 | 4.08E-36 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 177 | 214 | 1.44E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 179 | 219 | 6.5E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 220 | 754 | 2.8E-178 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 488 | 511 | 290.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 605 | 628 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 278 | 302 | 21.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 545 | 569 | 0.51 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 303 | 328 | 48.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 654 | 679 | 150.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_044332512.1 | transport inhibitor response 1-like protein Os04g0395600 [Triticum aestivum] | 0 |
| Q7XVM8 | Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0395600 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453BVR6 | F-box domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology