Basic Information
Locus ID:
Pt_Chr0302917
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 77091376 | 77097050 | - | Pt_Chr0302917 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 43,281.08 Da | 23.89 | 81.89 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 2 | 264 | 5.6E-81 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 2 | 320 | 6.71E-110 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 1 | 333 | 3.3E-125 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 1 | 381 | 1.5E-189 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 180 | 198 | 7.6E-22 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 103 | 119 | 7.6E-22 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 1 | 5 | 7.6E-22 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 163 | 176 | 7.6E-22 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 84 | 107 | 2.7E-23 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 202 | 212 | 2.7E-23 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 116 | 131 | 2.7E-23 | IPR000286 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 381 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44680.1 | histone deacetylase 9. Class I RPD3 type protein | 0 |
| RefSeq | XP_044966448.1 | histone deacetylase 9 isoform X2 [Hordeum vulgare subsp. vulgare] | 0 |
| Q8H0W2 | Histone deacetylase 9 OS=Arabidopsis thaliana OX=3702 GN=HDA9 PE=1 SV=1 | 0 | |
| TrEMBL | N1QX83 | Histone deacetylase OS=Aegilops tauschii OX=37682 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology