Basic Information
Locus ID:
Pt_Chr0302778
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 72585639 | 72597991 | - | Pt_Chr0302778 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 73,954.81 Da | 38.87 | 89.78 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 575 | 616 | 1.68596E-19 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 49 | 77 | 0.00253335 | - |
| Pfam | PF04564 | U-box domain | 574 | 638 | 9.8E-13 | IPR003613 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 77 | 250 | 1.1E-33 | IPR024729 |
| Pfam | PF00069 | Protein kinase domain | 319 | 552 | 4.0E-26 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 293 | 559 | 6.34E-49 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 572 | 641 | 2.56E-19 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 288 | 376 | 6.4E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 571 | 642 | 5.0E-22 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 377 | 570 | 6.1E-37 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 127 | 241 | 3.5E-27 | - |
| SMART | SM00504 | Ubox_2 | 574 | 637 | 2.4E-18 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 570 | 644 | 22.66445 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 289 | 559 | 22.916174 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 421 | 433 | - | IPR008266 |
| Coils | Coil | Coil | 242 | 297 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_047087049.1 | U-box domain-containing protein 57-like [Lolium rigidum] | 0 |
| Q0DR28 | U-box domain-containing protein 57 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB57 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8R7TLQ1 | U-box domain-containing protein 33 OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026965 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.3271, AH01.3272, BH01.3661, CH01.3844 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0462010 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0185430.1, HORVU.MOREX.r3.4HG0347270.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066275 |
| Poaceae | Oryza coarctata | 2 | Oco05G016260, Oco06G016910 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g31000.1, LOC_Os03g31044.2, LOC_Os03g31070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G320400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302778, Pt_Chr0704227 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr04G013600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G154600 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG056450, gene_TRIDC2BG059420 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G391300.1, TraesCS2B02G409700.1 ... |