Basic Information
Locus ID:
Pt_Chr0302666
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 69739787 | 69756990 | + | Pt_Chr0302666 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.82 | 329,527.59 Da | 50.44 | 75.87 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 2402 | 2534 | 1.26746E-69 | - |
| CDD | cd17920 | DEXHc_RecQ | 2200 | 2401 | 1.27168E-98 | - |
| CDD | cd15539 | PHD1_AIRE | 1231 | 1270 | 3.6025E-15 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 2421 | 2524 | 2.8E-15 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 2771 | 2836 | 4.8E-13 | IPR002121 |
| Pfam | PF09382 | RQC domain | 2623 | 2736 | 5.3E-18 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 2211 | 2381 | 5.0E-19 | IPR011545 |
| Pfam | PF16135 | Tify domain binding domain | 1153 | 1203 | 4.6E-15 | IPR032308 |
| Pfam | PF16124 | RecQ zinc-binding | 2536 | 2616 | 2.9E-15 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2184 | 2543 | 8.43E-42 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 2762 | 2841 | 1.13E-14 | IPR010997 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1210 | 1271 | 3.1E-13 | IPR011011 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2400 | 2665 | 9.82E-58 | IPR027417 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1417 | 1500 | 4.38E-8 | IPR016181 |
| Gene3D | G3DSA:1.10.10.10 | - | 2623 | 2732 | 1.1E-18 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 2402 | 2618 | 5.6E-63 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1215 | 1290 | 2.8E-16 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 2168 | 2401 | 8.6E-91 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 2761 | 2845 | 4.2E-21 | IPR044876 |
| SMART | SM00249 | PHD_3 | 1230 | 1271 | 1.0E-9 | IPR001965 |
| SMART | SM00341 | hrdc7 | 2764 | 2846 | 3.8E-6 | IPR002121 |
| SMART | SM00490 | helicmild6 | 2444 | 2525 | 7.3E-27 | IPR001650 |
| SMART | SM00956 | RQC_2 | 2625 | 2735 | 5.6E-16 | IPR018982 |
| SMART | SM00249 | PHD_3 | 1272 | 1327 | 8.6 | IPR001965 |
| SMART | SM00487 | ultradead3 | 2205 | 2410 | 1.1E-29 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 2201 | 2676 | 9.5E-164 | IPR004589 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 1364 | 1528 | 10.350739 | IPR000182 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 2434 | 2472 | 9.156826 | IPR001763 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1228 | 1273 | 9.623499 | IPR019787 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 2419 | 2578 | 19.676006 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 2765 | 2846 | 18.453907 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 2217 | 2394 | 21.757242 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 2333 | 2342 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2844 | 2859 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1033 | 1059 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 513 | 531 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2844 | 2907 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2866 | 2881 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 875 | 905 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2092 | 2114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 513 | 533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 878 | 905 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_047068892.1 | ATP-dependent DNA helicase Q-like 4A [Lolium rigidum] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0DEF1 | DNA helicase OS=Oryza meridionalis OX=40149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology