Basic Information
Locus ID:
Pt_Chr0302632
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 68535085 | 68552302 | + | Pt_Chr0302632 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 275,506.19 Da | 47.52 | 75.15 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 1098 | 1137 | 1.75565E-15 | - |
| CDD | cd17920 | DEXHc_RecQ | 1843 | 1999 | 3.22396E-76 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 1854 | 2004 | 1.0E-15 | IPR011545 |
| Pfam | PF09382 | RQC domain | 2129 | 2242 | 9.1E-18 | IPR018982 |
| Pfam | PF00570 | HRDC domain | 2277 | 2342 | 3.9E-13 | IPR002121 |
| Pfam | PF16135 | Tify domain binding domain | 1020 | 1070 | 3.7E-15 | IPR032308 |
| Pfam | PF16124 | RecQ zinc-binding | 2082 | 2122 | 1.5E-9 | IPR032284 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1284 | 1367 | 3.54E-8 | IPR016181 |
| SUPERFAMILY | SSF47819 | HRDC-like | 2268 | 2347 | 9.16E-15 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1820 | 2088 | 2.15E-41 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1998 | 2171 | 2.33E-36 | IPR027417 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1077 | 1138 | 2.44E-13 | IPR011011 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 2267 | 2351 | 3.4E-21 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 1811 | 2011 | 2.9E-72 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1083 | 1156 | 3.1E-16 | IPR013083 |
| Gene3D | G3DSA:1.10.10.10 | - | 2073 | 2237 | 1.8E-33 | IPR036388 |
| SMART | SM00249 | PHD_3 | 1139 | 1194 | 8.6 | IPR001965 |
| SMART | SM00487 | ultradead3 | 1848 | 2059 | 3.9E-21 | IPR014001 |
| SMART | SM00956 | RQC_2 | 2131 | 2241 | 1.8E-15 | IPR018982 |
| SMART | SM00341 | hrdc7 | 2270 | 2352 | 3.8E-6 | IPR002121 |
| SMART | SM00490 | helicmild6 | 1991 | 2072 | 4.3E-22 | IPR001650 |
| SMART | SM00249 | PHD_3 | 1097 | 1138 | 1.0E-9 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1095 | 1140 | 9.623499 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 1231 | 1395 | 10.350739 | IPR000182 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 2271 | 2352 | 18.453907 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1958 | 2126 | 16.499147 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1860 | 2022 | 14.746792 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 1976 | 1985 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1737 | 1757 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2350 | 2365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 900 | 925 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2372 | 2387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 742 | 772 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2350 | 2413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 405 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_047064257.1 | uncharacterized protein LOC124671992 [Lolium rigidum] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | B8AU06 | DNA helicase OS=Oryza sativa subsp. indica OX=39946 GN=OsI_15961 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology