halophFGD

Basic Information

Locus ID: Pt_Chr0302596

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description: BRCA1-associated protein 2

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr03	67362797	67372270	+	Pt_Chr0302596

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.68	26,602.72 Da	34.55	78.61	0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07576	BRCA1-associated protein 2	61	149	3.1E-30	IPR011422
Pfam	PF02148	Zn-finger in ubiquitin-hydrolases and other protein	217	242	5.7E-7	IPR001607
SUPERFAMILY	SSF57850	RING/U-box	180	241	2.18E-8	-
SUPERFAMILY	SSF54928	RNA-binding domain, RBD	62	138	1.93E-5	IPR035979
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	189	244	8.7E-11	IPR013083
ProSiteProfiles	PS50271	Zinc finger UBP-type profile.	215	244	10.80331	IPR001607
MobiDBLite	mobidb-lite	consensus disorder prediction	22	53	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)

KEGG Pathway

KO Term:

K10632 (BRCA1-associated protein [EC:2.3.2.27])

Pathway:

ko04014 (Ras signaling pathway) map04014 (Ras signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G26000.1	zinc finger (C3HC4-type RING finger) family protein.
RefSeq	XP_047069229.1	BRAP2 RING ZnF UBP domain-containing protein 1-like isoform X2 [Lolium rigidum]
Swiss-Prot	O80996	BRAP2 RING ZnF UBP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BRIZ2 PE=1 SV=1
TrEMBL	A0A8R7PF39	BRCA1-associated protein OS=Triticum urartu OX=4572 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg13483, jg30151
Aizoaceae	Mesembryanthemum crystallinum	2	gene_26234, gene_8965
Amaranthaceae	Atriplex hortensis	2	Ah010413, Ah028443
Amaranthaceae	Beta vulgaris	1	BVRB_8g193950
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg11643, Sbi_jg25645, Sbi_jg46752, Sbi_jg6727 ... Sbi_jg9466
Amaranthaceae	Salicornia europaea	2	Seu_jg19150, Seu_jg20897
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001863, GOSA_00010991
Amaranthaceae	Suaeda glauca	5	Sgl41994, Sgl46769, Sgl56022, Sgl60568, Sgl61215
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000007636, gene:ENSEOMG00000038006 ... gene:ENSEOMG00000039187, gene:ENSEOMG00000039851, gene:ENSEOMG00000052220
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.7BG0009090, CQ.Regalona.r1.9BG0009040
Anacardiaceae	Pistacia vera	3	pistato.v30129530, pistato.v30129570, pistato.v30254900
Apiaceae	Apium graveolens	2	Ag3G02757, Ag9G01191
Arecaceae	Cocos nucifera	2	COCNU_11G000060, COCNU_11G008190
Arecaceae	Phoenix dactylifera	2	gene-LOC103706462, gene-LOC103710083
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.3315.V1.1, AsparagusV1_08.1576.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G32698, Ftri16G26820
Brassicaceae	Arabidopsis thaliana	2	AT2G26000.2, AT2G42160.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10004093m.g.v1.0, Thhalv10018494m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g26300.v2.2, Sp5g35210.v2.2
Brassicaceae	Brassica nigra	2	BniB05g075610.2N, BniB06g011650.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G0597
Casuarinaceae	Casuarina glauca	1	Cgl06G0617
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g05440, gene.Cymno03g03720
Dunaliellaceae	Dunaliella salina	1	Dusal.0313s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate07g07880, gene.Thate07g13950
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.787, evm.TU.LG07.934
Plantaginaceae	Plantago ovata	2	Pov_00034532, Pov_00039768
Plumbaginaceae	Limonium bicolor	2	Lb6G31727, Lb7G32914
Poaceae	Echinochloa crus-galli	7	AH07.610, AH09.2502, BH05.1545, BH07.735, BH09.2725 ... CH01.1621, CH09.2922
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0104010, gene-QOZ80_2BG0157310 ... gene-QOZ80_4AG0301680, gene-QOZ80_4BG0332400
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0204960.1, HORVU.MOREX.r3.6HG0568250.1
Poaceae	Lolium multiflorum	2	gene-QYE76_021077, gene-QYE76_046735
Poaceae	Oryza coarctata	4	Oco03G004240, Oco04G004200, Oco04G004210, Oco07G017490
Poaceae	Oryza sativa	2	LOC_Os02g09060.1, LOC_Os04g55480.1
Poaceae	Paspalum vaginatum	3	gene-BS78_04G062500, gene-BS78_06G250900 ... gene-BS78_06G258500
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0202287, Pt_Chr0300720, Pt_Chr0300775, Pt_Chr0302596 ... Pt_Chr0702839
Poaceae	Sporobolus alterniflorus	4	Chr15G025060, Chr22G012520, Chr23G002470, Chr26G016880
Poaceae	Thinopyrum elongatum	2	Tel2E01G873400, Tel6E01G302900
Poaceae	Triticum dicoccoides	5	gene_TRIDC2AG072370, gene_TRIDC2BG078350 ... gene_TRIDC2BG078390, gene_TRIDC6AG019920, gene_TRIDC6BG025930
Poaceae	Triticum aestivum	8	TraesCS2A02G515000.1, TraesCS2A02G515200.1 ... TraesCS2B02G543300.1, TraesCS2D02G516500.1, TraesCS2D02G516600.1, TraesCS6A02G145300.2, TraesCS6B02G173500.2, TraesCS6D02G134300.1
Poaceae	Zea mays	2	Zm00001eb068570_P002, Zm00001eb234370_P001
Poaceae	Zoysia japonica	4	nbis-gene-23013, nbis-gene-33573, nbis-gene-47991 ... nbis-gene-6022
Poaceae	Zoysia macrostachya	3	Zma_g12321, Zma_g20553, Zma_g22094
Portulacaceae	Portulaca oleracea	2	evm.TU.LG08.971, evm.TU.LG22.101
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g04040, gene.Posoc02g23850
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_10_RagTag.57, evm.TU.Scaffold_11_RagTag.191
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12873, nbisL1-mrna-14257
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-20049, nbisL1-mrna-21313
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-14384, nbisL1-mrna-16497
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000005l.263, evm.TU.utg000033l.38
Rhizophoraceae	Kandelia obovata	2	Maker00010115, Maker00014860
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-16735, nbisL1-mrna-328
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-14460, nbisL1-mrna-19037
Salicaceae	Populus euphratica	4	populus_peu05743, populus_peu14103, populus_peu23216 ... populus_peu23217
Solanaceae	Lycium barbarum	2	gene-LOC132603151, gene-LOC132633320
Solanaceae	Solanum chilense	2	SOLCI002474300, SOLCI003056200
Solanaceae	Solanum pennellii	2	gene-LOC107012390, gene-LOC107024273
Tamaricaceae	Reaumuria soongarica	2	gene_10968, gene_8982
Tamaricaceae	Tamarix chinensis	2	TC08G1442, TC10G1283
Zosteraceae	Zostera marina	2	Zosma04g18000.v3.1, Zosma06g25840.v3.1