Basic Information
Locus ID:
Pt_Chr0302434
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 61541622 | 61543917 | + | Pt_Chr0302434 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 70,627.48 Da | 49.81 | 92.64 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 62 | 6.1E-5 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 115 | 172 | 2.4E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 367 | 629 | 4.1E-37 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 26 | 225 | 2.04E-35 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 368 | 630 | 9.83E-57 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 184 | 226 | 5.1E-7 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 180 | 6.7E-37 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 439 | 640 | 2.8E-44 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 355 | 438 | 6.1E-18 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 364 | 635 | 32.96545 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 370 | 392 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 638 | 667 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 253 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48480.1 | receptor-like kinase 1. Arabidopsis thaliana receptor-like protein kinase (RKL1) gene | 0 |
| RefSeq | XP_047070152.1 | probable inactive receptor kinase At1g48480 [Lolium rigidum] | 0 |
| Q9LP77 | Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana OX=3702 GN=RKL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6CAN2 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH09.1261, BH09.1371, CH09.1478 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0314710, gene-QOZ80_4BG0345750 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0173600.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044429 |
| Poaceae | Oryza coarctata | 2 | Oco07G007760, Oco08G007670 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g38910.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G123900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302434, Pt_Chr0302463 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G011460, Chr25G008420, Chr26G008110, Chr30G008290 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G570900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG047780, gene_TRIDC2BG050280 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G337000.1, TraesCS2B02G344900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb080550_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-53733 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19850, Zma_g21409 |