Basic Information
Locus ID:
Pt_Chr0302374
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 60013692 | 60016108 | + | Pt_Chr0302374 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 35,082.73 Da | 50.90 | 68.33 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 14 | 185 | 1.3E-76 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 3 | 108 | 3.3E-41 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 110 | 183 | 3.1E-33 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 228 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_047068151.1 | ubiquitin fusion degradation protein 1 homolog [Lolium rigidum] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A453CL12 | Ubiquitin fusion degradation protein 1-like protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology