Basic Information
Locus ID:
Pt_Chr0302325
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 58589643 | 58590617 | + | Pt_Chr0302325 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 35,867.50 Da | 51.44 | 68.95 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 14 | 185 | 5.0E-77 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 110 | 183 | 1.4E-33 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 3 | 108 | 3.6E-41 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 247 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_047068151.1 | ubiquitin fusion degradation protein 1 homolog [Lolium rigidum] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A453CL12 | Ubiquitin fusion degradation protein 1-like protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology