Basic Information
Locus ID:
Pt_Chr0302219
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 55666128 | 55674253 | + | Pt_Chr0302219 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 87,010.09 Da | 49.83 | 63.87 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 583 | 627 | 3.17226E-5 | IPR002999 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 580 | 627 | 7.31E-9 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 47 | 234 | 9.42E-6 | IPR016024 |
| Gene3D | G3DSA:2.30.30.140 | - | 575 | 629 | 3.8E-13 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 731 | 756 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 801 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 321 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 706 | 720 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 790 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 693 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 578 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 520 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 0 | |
| RefSeq | XP_051218060.1 | sister chromatid cohesion protein PDS5 homolog C-like [Lolium perenne] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | I1IZC1 | Tudor domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100825062 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology