Basic Information
Locus ID:
Pt_Chr0302144
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 53865804 | 53871235 | + | Pt_Chr0302144 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 79,767.07 Da | 46.11 | 85.20 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 13 | 140 | 4.4176E-30 | IPR002083 |
| CDD | cd18280 | BTB_POZ_BPM_plant | 160 | 276 | 4.14334E-45 | - |
| CDD | cd00121 | MATH | 359 | 492 | 1.74192E-29 | IPR002083 |
| Pfam | PF00917 | MATH domain | 32 | 138 | 9.7E-5 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 524 | 635 | 6.9E-24 | IPR000210 |
| Pfam | PF00917 | MATH domain | 377 | 490 | 0.0011 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 166 | 278 | 4.8E-27 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 505 | 636 | 2.92E-29 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 355 | 500 | 5.07E-32 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 151 | 277 | 1.1E-30 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 10 | 145 | 6.7E-34 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 150 | 273 | 6.2E-36 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 508 | 630 | 1.0E-34 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 278 | 351 | 2.2E-19 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 356 | 496 | 9.3E-30 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 11 | 144 | 1.0E-29 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 635 | 706 | 1.6E-17 | - |
| SMART | SM00061 | math_3 | 362 | 474 | 0.013 | IPR002083 |
| SMART | SM00061 | math_3 | 16 | 122 | 1.1E-4 | IPR002083 |
| SMART | SM00225 | BTB_4 | 174 | 279 | 9.2E-27 | IPR000210 |
| SMART | SM00225 | BTB_4 | 531 | 636 | 8.4E-22 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 174 | 241 | 17.789566 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 11 | 139 | 19.726135 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 357 | 491 | 24.354214 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 531 | 598 | 17.272514 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_051218194.1 | BTB/POZ and MATH domain-containing protein 2-like [Lolium perenne] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3GXL8 | MATH domain-containing protein OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology