Basic Information
Locus ID:
Pt_Chr0302092
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
ABC transporter C family member 9
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 52099080 | 52106945 | + | Pt_Chr0302092 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 171,853.55 Da | 44.30 | 101.96 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1291 | 1511 | 8.62026E-124 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 344 | 632 | 5.97779E-93 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 658 | 858 | 2.39377E-109 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 976 | 1268 | 6.20191E-93 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 345 | 611 | 2.7E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1310 | 1458 | 4.3E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1009 | 1220 | 6.3E-31 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 677 | 810 | 3.0E-18 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 977 | 1273 | 1.02E-51 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 652 | 875 | 3.06E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1283 | 1518 | 7.63E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 339 | 640 | 5.36E-34 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 939 | 1274 | 4.3E-58 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 320 | 641 | 3.1E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 653 | 885 | 2.5E-69 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1276 | 1529 | 1.1E-81 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1319 | 1511 | 7.6E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 685 | 858 | 1.1E-9 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1295 | 1527 | 16.573435 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 658 | 881 | 21.622095 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 976 | 1256 | 36.46505 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 348 | 624 | 34.126328 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 783 | 797 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 901 | 921 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 931 | 950 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_047071122.1 | putative ABC transporter C family member 15 [Lolium rigidum] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8I7B848 | ABC transporter C family member 15 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology