Basic Information
Locus ID:
Pt_Chr0301973
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 48784688 | 48796674 | - | Pt_Chr0301973 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 105,276.55 Da | 50.55 | 75.64 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 706 | 766 | 1.0E-4 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 253 | 361 | 3.0E-6 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 132 | 389 | 4.4E-21 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 830 | 905 | 9.92E-8 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 706 | 766 | 1.14E-9 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 131 | 389 | 1.5E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 702 | 770 | 2.0E-7 | - |
| SMART | SM00577 | forpap2 | 196 | 372 | 1.2E-11 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 703 | 767 | 0.0019 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 829 | 897 | 0.013 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 702 | 768 | 11.042881 | IPR014720 |
| ProSiteProfiles | PS50825 | HYR domain profile. | 37 | 127 | 9.51261 | IPR003410 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 137 | 388 | 15.809887 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 562 | 583 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 583 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 559 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_047066556.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Lolium rigidum] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453CGF4 | protein-serine/threonine phosphatase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology