Basic Information
Locus ID:
Pt_Chr0301935
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 48042921 | 48043712 | + | Pt_Chr0301935 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.67 | 28,938.86 Da | 51.43 | 76.01 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 44 | 98 | 5.42048E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 46 | 96 | 6.4E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 43 | 109 | 5.05E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 110 | 1.2E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 46 | 96 | 2.1E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 46 | 97 | 12.430266 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 61 | 70 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03510.1 | RING membrane-anchor 1. RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity. | 0 |
| RefSeq | XP_051218384.1 | E3 ubiquitin-protein ligase RMA1H1-like [Lolium perenne] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7TKP0 | RING-type E3 ubiquitin transferase OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology