Basic Information
Locus ID:
Pt_Chr0301572
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 37156758 | 37158401 | - | Pt_Chr0301572 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 60,821.76 Da | 50.40 | 86.07 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 47 | 202 | 6.46532E-23 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 10 | 358 | 9.7E-99 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 361 | 419 | 7.4E-11 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 85 | 136 | 3.5E-6 | IPR002934 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 203 | 359 | 1.02E-56 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 10 | 198 | 1.47E-45 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 360 | 490 | 2.55E-31 | IPR011068 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 40 | 196 | 1.4E-139 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 10 | 357 | 1.4E-139 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 361 | 481 | 4.3E-26 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 1 | 543 | 3.4E-187 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 547 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_047063756.1 | nuclear poly(A) polymerase 2-like [Lolium rigidum] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6WYS7 | Poly(A) polymerase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology