Basic Information
Locus ID:
Pt_Chr0301535
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
E3 ubiquitin-protein ligase RNF14
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 35851931 | 35865629 | - | Pt_Chr0301535 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 158,448.56 Da | 49.35 | 84.76 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 605 | 662 | 8.1E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 1277 | 1314 | 5.1E-7 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 1178 | 1235 | 1.5E-7 | IPR002867 |
| Pfam | PF05773 | RWD domain | 919 | 1049 | 1.4E-21 | IPR006575 |
| Pfam | PF00902 | Sec-independent protein translocase protein (TatC) | 116 | 324 | 8.9E-60 | IPR002033 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 1110 | 1142 | 4.0E-5 | IPR018957 |
| Pfam | PF05773 | RWD domain | 381 | 513 | 6.9E-22 | IPR006575 |
| SUPERFAMILY | SSF54495 | UBC-like | 915 | 1049 | 1.51E-20 | IPR016135 |
| SUPERFAMILY | SSF57850 | RING/U-box | 605 | 664 | 2.82E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 700 | 736 | 1.94E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1267 | 1329 | 4.77E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1178 | 1240 | 2.3E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1106 | 1191 | 1.06E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1348 | 1400 | 1.29E-6 | - |
| SUPERFAMILY | SSF54495 | UBC-like | 376 | 513 | 8.38E-20 | IPR016135 |
| SUPERFAMILY | SSF57850 | RING/U-box | 771 | 821 | 6.53E-8 | - |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 373 | 519 | 7.1E-29 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 910 | 1056 | 9.1E-27 | IPR016135 |
| Gene3D | G3DSA:1.20.120.1750 | - | 693 | 759 | 3.1E-7 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 1244 | 1344 | 1.3E-11 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 760 | 863 | 2.6E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1107 | 1193 | 1.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 1198 | 1284 | 3.1 | IPR001841 |
| SMART | SM00184 | ring_2 | 711 | 777 | 0.47 | IPR001841 |
| SMART | SM00184 | ring_2 | 1110 | 1157 | 2.7E-4 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 1178 | 1235 | 1.3E-11 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 1262 | 1320 | 0.3 | IPR002867 |
| SMART | SM00591 | RWD2001b | 385 | 517 | 4.1E-20 | IPR006575 |
| SMART | SM00647 | ibrneu5 | 605 | 662 | 3.6E-10 | IPR002867 |
| SMART | SM00184 | ring_2 | 1353 | 1382 | 3.5 | IPR001841 |
| SMART | SM00591 | RWD2001b | 923 | 1054 | 6.8E-20 | IPR006575 |
| TIGRFAM | TIGR00945 | tatC: twin arginine-targeting protein translocase TatC | 114 | 329 | 3.6E-79 | IPR002033 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 512 | 764 | 14.357468 | IPR044066 |
| ProSiteProfiles | PS50908 | RWD domain profile. | 385 | 517 | 18.005573 | IPR006575 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1110 | 1158 | 10.92546 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 1106 | 1330 | 23.916229 | IPR044066 |
| ProSiteProfiles | PS50908 | RWD domain profile. | 923 | 1054 | 16.580059 | IPR006575 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1127 | 1136 | - | IPR017907 |
| ProSitePatterns | PS01218 | TatC family signature. | 256 | 275 | - | IPR019820 |
| PRINTS | PR01840 | Bacterial Sec-independent translocation TatC protein family signature | 205 | 231 | 1.6E-39 | IPR002033 |
| PRINTS | PR01840 | Bacterial Sec-independent translocation TatC protein family signature | 187 | 205 | 1.6E-39 | IPR002033 |
| PRINTS | PR01840 | Bacterial Sec-independent translocation TatC protein family signature | 113 | 140 | 1.6E-39 | IPR002033 |
| PRINTS | PR01840 | Bacterial Sec-independent translocation TatC protein family signature | 256 | 284 | 1.6E-39 | IPR002033 |
| Hamap | MF_00902 | Sec-independent protein translocase protein TatC [tatC]. | 109 | 340 | 15.998407 | IPR002033 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 848 | 885 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 74 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32340.1 | NDR1/HIN1-like 8. Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine. | 0 |
| RefSeq | XP_047069960.1 | E3 ubiquitin-protein ligase RNF14-like [Lolium rigidum] | 0 |
| Q9AVE6 | Sec-independent protein translocase protein TATC, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TATC PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D9W8V0 | RING-type domain-containing protein OS=Leersia perrieri OX=77586 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg5212, jg7294, jg9115 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4090 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025502 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g143080 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg12881, Sbi_jg36217, Sbi_jg52990 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg4311, Seu_jg8868 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00021462, GOSA_00022145, GOSA_00024757 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl25377, Sgl30556, Sgl33047, Sgl38283 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000512, gene:ENSEOMG00000002990 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0013460, CQ.Regalona.r1.6BG0014020 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30215990 |
| Apiaceae | Apium graveolens | 2 | Ag1G01604, Ag6G00536 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G005480 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705632, gene-LOC103715160 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3194.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G08938, Ftri13G24304, Ftri18G24265 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G01110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000946m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g12580.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g064510.2N, BniB04g009920.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G2068 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2268 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g14340, gene.Cymno11g02270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0450s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00150 |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.Contig10.11, evm.TU.Contig10.5, evm.TU.LG03.1469 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019106 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13258, Lb2G13263 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.4263, BH02.4295, BH04.1859, CH02.4335 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0018590, gene-QOZ80_1BG0068580 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0261530.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046000 |
| Poaceae | Oryza coarctata | 2 | Oco01G010820, Oco02G011740 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g31680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G226500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301535, Pt_Chr0301555 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G012930, Chr14G009100, Chr21G009270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G332600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG027340, gene_TRIDC3BG032550 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G193600.1, TraesCS3B02G224200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb009240_P002, Zm00001eb399680_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21630 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG04.2746, evm.TU.LG08.404, evm.TU.LG08.405 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g04140, gene.Posoc04g21740 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.141 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9195 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17475 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.87 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004794 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11637 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2793 |
| Salicaceae | Populus euphratica | 1 | populus_peu21099 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641665 |
| Solanaceae | Solanum chilense | 1 | SOLCI005484900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020382 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1584 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1351 |
| Zosteraceae | Zostera marina | 2 | Zosma03g01760.v3.1, Zosma04g19260.v3.1 |