Basic Information
Locus ID:
Pt_Chr0301492
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Cobalamin synthesis protein cobW C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 34664432 | 34671455 | - | Pt_Chr0301492 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 100,048.58 Da | 43.63 | 86.72 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03112 | CobW-like | 70 | 272 | 1.3559E-97 | - |
| CDD | cd00200 | WD40 | 603 | 876 | 8.79879E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 840 | 876 | 0.0016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 702 | 737 | 2.2E-6 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 620 | 679 | 9.4E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 753 | 791 | 0.013 | IPR001680 |
| Pfam | PF02492 | CobW/HypB/UreG, nucleotide-binding domain | 70 | 255 | 6.2E-55 | IPR003495 |
| Pfam | PF07683 | Cobalamin synthesis protein cobW C-terminal domain | 312 | 403 | 3.7E-20 | IPR011629 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 582 | 878 | 2.59E-59 | IPR011047 |
| SUPERFAMILY | SSF90002 | Hypothetical protein YjiA, C-terminal domain | 312 | 403 | 7.19E-24 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 69 | 281 | 1.33E-35 | IPR027417 |
| Gene3D | G3DSA:2.130.10.10 | - | 528 | 879 | 1.4E-122 | IPR015943 |
| Gene3D | G3DSA:3.30.1220.10 | - | 294 | 404 | 8.4E-35 | IPR036627 |
| Gene3D | G3DSA:3.40.50.300 | - | 67 | 274 | 1.1E-70 | IPR027417 |
| SMART | SM00320 | WD40_4 | 698 | 737 | 2.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 749 | 791 | 0.0035 | IPR001680 |
| SMART | SM00320 | WD40_4 | 656 | 694 | 0.84 | IPR001680 |
| SMART | SM00320 | WD40_4 | 837 | 876 | 6.6E-6 | IPR001680 |
| SMART | SM00833 | CobW_C_3 | 312 | 406 | 1.9E-8 | IPR011629 |
| SMART | SM00320 | WD40_4 | 794 | 834 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 614 | 653 | 2.2E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 621 | 653 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 621 | 662 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 705 | 746 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 705 | 739 | 11.444681 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 844 | 877 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 844 | 877 | 10.416506 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 863 | 877 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 724 | 738 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_047067102.1 | cell division cycle 20.2, cofactor of APC complex-like [Lolium rigidum] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | R7VZP8 | Uncharacterized protein OS=Aegilops tauschii OX=37682 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18265, jg4695 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15102, gene_21416 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004442, Ah010449 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g107790, BVRB_9g219160 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg11616, Sbi_jg18388, Sbi_jg20623, Sbi_jg23822 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12370, Seu_jg20866 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005136, GOSA_00010956 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51177, Sgl56358, Sgl56481, Sgl61889 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000004224, gene:ENSEOMG00000016287 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0001220, CQ.Regalona.r1.5BG0001320 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30129130, pistato.v30245640 |
| Apiaceae | Apium graveolens | 2 | Ag5G01290, Ag9G01186 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G017960, scaffold014295G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103697578, gene-LOC103715886, gene-LOC120107156 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.1025.V1.1, AsparagusV1_08.1613.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G02611, Ftri1G25061 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G15730.1, AT1G80480.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007622m.g.v1.0, Thhalv10018560m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g14020.v2.2, Sp5g35320.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g075760.2N, BniB06g041060.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0135, Ceq02G0350 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G0120, Cgl02G0365 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g03500, gene.Cymno16g05010 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0089s00003.v1.0, Dusal.0167s00001.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g07150, gene.Thate07g12260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3275 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.767, evm.TU.LG05.911 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003808, Pov_00034545 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G12025, Lb3G20697, Lb4G21946 |
| Poaceae | Echinochloa crus-galli | 5 | AH07.3810, AH09.2177, BH07.3631, BH09.2349, CH07.3704 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0149310, gene-QOZ80_2BG0204860 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0193910.1, HORVU.MOREX.r3.6HG0625860.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_026524, gene-QYE76_046087, gene-QYE76_063378 |
| Poaceae | Oryza coarctata | 4 | Oco03G024470, Oco04G024940, Oco07G014890, Oco08G014380 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g55630.1, LOC_Os04g51100.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G308500, gene-BS78_06G215100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0206193, Pt_Chr0206223, Pt_Chr0301452, Pt_Chr0301492 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr09G017440, Chr0G009250, Chr0G013060, Chr13G001630 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G751100, Tel6E01G654200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG063220, gene_TRIDC2BG067190 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G439900.1, TraesCS2B02G461500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb258070_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-22749, nbis-gene-8406, nbis-gene-8407 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14637, Zma_g20369 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1279, evm.TU.LG10.587, evm.TU.LG11.624 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g04460, gene.Posoc09g01110 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.46188.3, evm.TU.Scaffold_14_RagTag.752 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-17712, nbisL1-mrna-7253, nbisL1-mrna-7272 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-11477, nbisL1-mrna-16605, nbisL1-mrna-17590 ... |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-17093, nbisL1-mrna-7804, nbisL1-mrna-7820 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000025l.1, evm.TU.utg000023l.226 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00012178, Maker00012378, Maker00018802 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15849 |
| Rhizophoraceae | Rhizophora mangle | 6 | nbisL1-mrna-19469, nbisL1-mrna-22207, nbisL1-mrna-22222 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu02596, populus_peu03271, populus_peu33478 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132633069, gene-LOC132635389 |
| Solanaceae | Solanum chilense | 2 | SOLCI004308500, SOLCI007513200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014866, gene-LOC107026914 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19276_chr07_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G2268, TC09G1030 |
| Zosteraceae | Zostera marina | 2 | Zosma01g32480.v3.1, Zosma05g00130.v3.1 |