Basic Information
Locus ID:
Pt_Chr0301426
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 32732184 | 32742301 | + | Pt_Chr0301426 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 138,387.77 Da | 46.65 | 70.15 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13532 | 2OG-Fe(II) oxygenase superfamily | 1068 | 1232 | 5.6E-15 | IPR027450 |
| Pfam | PF00069 | Protein kinase domain | 129 | 262 | 1.1E-20 | IPR000719 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 916 | 1009 | 2.03E-7 | IPR035979 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 122 | 446 | 4.79E-47 | IPR011009 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 1029 | 1234 | 5.49E-30 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 165 | 278 | 2.5E-25 | - |
| Gene3D | G3DSA:2.60.120.590 | - | 1030 | 1237 | 5.7E-47 | IPR037151 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 283 | 428 | 7.2E-14 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 92 | 164 | 1.0E-14 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 919 | 1010 | 5.1E-7 | IPR012677 |
| SMART | SM00220 | serkin_6 | 128 | 427 | 3.0E-32 | IPR000719 |
| ProSiteProfiles | PS51471 | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 1111 | 1235 | 8.209001 | IPR005123 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 927 | 1005 | 10.087302 | IPR000504 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 128 | 427 | 19.481611 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 134 | 157 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 230 | 242 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35980.1 | yeast YAK1-related gene 1. | 0 |
| RefSeq | XP_037487015.1 | dual specificity protein kinase YAK1 homolog isoform X2 [Triticum dicoccoides] | 0 |
| Q8RWH3 | Dual specificity protein kinase YAK1 homolog OS=Arabidopsis thaliana OX=3702 GN=YAK1 PE=1 SV=1 | 0 | |
| TrEMBL | N1QZT7 | Putative serine/threonine-protein kinase yakA OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13776, jg2046 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16407 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018293 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g049430 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14799, Sbi_jg55582 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26138 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018002 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01047, Sgl06135 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001512, gene:ENSEOMG00000031172 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0007650, CQ.Regalona.r1.3BG0007760 |
| Apiaceae | Apium graveolens | 1 | Ag10G02401 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G015820, COCNU_10G009990 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103713009, gene-LOC103718768, gene-LOC120103869 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3475.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G15471, Ftri1G16684 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G35980.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003604m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g06110.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g031550.2N, BniB06g060890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1723 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl09G1869, Cgl09G1896 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g01880, gene.Cymno18g04340 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0472s00002.v1.0, Dusal.0613s00005.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g05220 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7997 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1866 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011327 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04121, Lb3G19253 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.3128, AH09.2201, BH07.2956, BH09.2372, CH07.3030 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0142290, gene-QOZ80_2BG0197780 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0193090.1, HORVU.MOREX.r3.6HG0607110.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024633, gene-QYE76_046130 |
| Poaceae | Oryza coarctata | 4 | Oco03G019140, Oco04G019910, Oco07G015120, Oco08G014620 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g47410.1, LOC_Os04g51370.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G245900, gene-BS78_06G217900 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0203897, Pt_Chr0203906, Pt_Chr0301413, Pt_Chr0301426 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G032020, Chr06G004270, Chr06G004280, Chr06G004290 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G738900, Tel6E01G497500 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG062820, gene_TRIDC2BG066620 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G436800.1, TraesCS2B02G456400.3 ... |
| Poaceae | Zea mays | 3 | Zm00001eb071720_P001, Zm00001eb251910_P006 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-22770, nbis-gene-5757, nbis-gene-9015 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14216, Zma_g20385, Zma_g21918 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.2, evm.TU.LG09.1266, evm.TU.LG09.1267 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g03510 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.1225, evm.TU.Scaffold_1_RagTag.551 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-18159, nbisL1-mrna-3457, nbisL1-mrna-7648 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14391, nbisL1-mrna-9700 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13952, nbisL1-mrna-8490 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000004l.141, add.evm.TU.utg000007l.139 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005394 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12773, nbisL1-mrna-23230 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10860, nbisL1-mrna-16435 |
| Salicaceae | Populus euphratica | 4 | populus_peu09157, populus_peu16276, populus_peu19249 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632281 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014386 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9903 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1188 |
| Zosteraceae | Zostera marina | 2 | Zosma02g15550.v3.1, Zosma06g03500.v3.1 |