Basic Information
Locus ID:
Pt_Chr0301251
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 29251679 | 29255112 | + | Pt_Chr0301251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 39,588.91 Da | 40.69 | 79.74 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 24 | 59 | 1.65353E-9 | IPR002048 |
| Pfam | PF00036 | EF hand | 24 | 52 | 5.2E-8 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 67 | 187 | 8.0E-10 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 13 | 66 | 9.78E-12 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 61 | 222 | 1.37E-33 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 15 | 57 | 3.5E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 58 | 227 | 2.5E-51 | - |
| SMART | SM00054 | efh_1 | 24 | 52 | 6.6E-8 | IPR002048 |
| SMART | SM00220 | serkin_6 | 5 | 236 | 0.004 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 235 | 13.135447 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 20 | 55 | 16.298712 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 33 | 45 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 84 | 96 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25760.1 | Protein kinase family protein. | 0 |
| RefSeq | XP_051223730.1 | casein kinase 1-like protein HD16 [Lolium perenne] | 0 |
| Q852L0 | Casein kinase 1-like protein HD16 OS=Oryza sativa subsp. japonica OX=39947 GN=HD16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453EDH9 | Protein kinase domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23892 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0010480 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301251, Pt_Chr0306813 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG062280 |