HalophFGD

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Basic Information
Locus ID: Pt_Chr0301242
Species & Taxonomic ID: Puccinellia tenuiflora & 240906
Genome Assembly: GCA_012064385.1
Description: protein heterodimerization activity
Maps and Mapping Data
Chromosome Start End Strand ID
Chr03 29163952 29166509 + Pt_Chr0301242
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.06 38,236.55 Da 44.91 88.39 -0.09
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF12937 F-box-like 40 77 4.5E-7 IPR001810
SUPERFAMILY SSF81383 F-box domain 40 83 7.85E-10 IPR036047
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 38 150 2.6E-10 IPR032675
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
KEGG Pathway
KO Term:
K11252 (histone H2B)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_044335647.1 uncharacterized protein LOC123055899 [Triticum aestivum] 0
TrEMBL M8BWI3 Uncharacterized protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.2HG0190990.1.CDS1
Poaceae Lolium multiflorum 2 gene-QYE76_057616, gene-QYE76_057617
Poaceae Puccinellia tenuiflora 6 Pt_Chr0301242, Pt_Chr0301243, Pt_Chr0301245, Pt_Chr0306809 ...
Pt_Chr0307080, Pt_Chr0307081
Poaceae Thinopyrum elongatum 1 Tel2E01G978200
Poaceae Triticum dicoccoides 1 gene_TRIDC2BG064650
Poaceae Triticum aestivum 10 TraesCS2A02G423000.1.cds1, TraesCS2B02G442200.1.cds1 ...
TraesCS2B02G442600.1.cds1, TraesCS2B02G601500.1.cds1, TraesCS2D02G420800.1.cds1, TraesCS2D02G594900.1, TraesCS3B02G483200.1.cds1, TraesCS3B02G483300.1.cds1, TraesCS3B02G483400.1.cds1, TraesCSU02G036200.1.cds1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.