Basic Information
Locus ID:
Pt_Chr0301124
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 25514911 | 25518616 | - | Pt_Chr0301124 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 71,299.49 Da | 41.95 | 66.61 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 487 | 539 | 3.0E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 476 | 539 | 1.63E-15 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 548 | 634 | 2.44E-5 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 460 | 547 | 2.6E-15 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 552 | 631 | 1.4E-5 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 485 | 557 | 9.4E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 484 | 539 | 11.929285 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 646 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 491 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18610.2 | - | 0 |
| RefSeq | XP_044983992.1 | uncharacterized protein LOC123451041 [Hordeum vulgare subsp. vulgare] | 0 |
| Q7XTT4 | Nucleolin 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0620700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8I6XFD3 | DUF295 domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology