Basic Information
Locus ID:
Pt_Chr0301111
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
protein modification by small protein conjugation or removal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 25248515 | 25250174 | + | Pt_Chr0301111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 47,160.45 Da | 42.02 | 89.84 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 146 | 191 | 6.07122E-8 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 216 | 332 | 1.1E-21 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 207 | 332 | 1.69E-27 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 105 | 200 | 1.13E-10 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 202 | 329 | 2.1E-31 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 134 | 195 | 1.8E-5 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 334 | 410 | 1.1E-11 | - |
| SMART | SM00225 | BTB_4 | 226 | 334 | 1.7E-18 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 226 | 288 | 16.734783 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_047063660.1 | BTB/POZ and MATH domain-containing protein 2-like [Lolium rigidum] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5ZPM5 | BTB domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046262 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0301109, Pt_Chr0301111, Pt_Chr0307445, Pt_Chr0307447 |