Basic Information
Locus ID:
Pt_Chr0301101
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 24996646 | 24997673 | - | Pt_Chr0301101 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 33,760.53 Da | 37.49 | 84.55 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 19 | 150 | 9.01256E-19 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 180 | 271 | 9.4E-19 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 17 | 162 | 4.41E-26 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 170 | 272 | 4.51E-26 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 18 | 156 | 7.4E-22 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 157 | 278 | 1.6E-28 | IPR011333 |
| SMART | SM00225 | BTB_4 | 188 | 289 | 1.3E-12 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 18 | 152 | 12.489966 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 188 | 249 | 17.479336 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39760.1 | BTB/POZ/MATH-domains containing protein. | 0 |
| RefSeq | XP_003579316.1 | BTB/POZ and MATH domain-containing protein 1 [Brachypodium distachyon] | 0 |
| O22286 | BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=BPM3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0Q3EA44 | BTB domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100831089 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301098, Pt_Chr0301101 |