Basic Information
Locus ID:
Pt_Chr0301081
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 24660778 | 24672762 | - | Pt_Chr0301081 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 110,109.43 Da | 38.97 | 80.29 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 669 | 790 | 8.26444E-16 | IPR002083 |
| CDD | cd00121 | MATH | 339 | 461 | 1.1604E-15 | IPR002083 |
| CDD | cd00121 | MATH | 29 | 116 | 8.02903E-14 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 181 | 274 | 4.8E-22 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 806 | 922 | 2.8E-23 | IPR000210 |
| Pfam | PF00917 | MATH domain | 357 | 448 | 1.5E-4 | IPR002083 |
| Pfam | PF00917 | MATH domain | 46 | 114 | 0.0069 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 495 | 602 | 5.3E-24 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 336 | 466 | 4.09E-23 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 483 | 601 | 1.26E-26 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 27 | 118 | 1.19E-18 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 665 | 792 | 3.43E-15 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 171 | 312 | 4.51E-27 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 795 | 921 | 3.14E-27 | IPR011333 |
| Gene3D | G3DSA:6.10.250.3030 | - | 918 | 966 | 2.6E-11 | - |
| Gene3D | G3DSA:6.10.250.3030 | - | 598 | 666 | 7.9E-12 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 27 | 154 | 2.6E-16 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 667 | 792 | 9.5E-15 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 336 | 466 | 6.7E-21 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 476 | 597 | 2.8E-29 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 793 | 917 | 1.6E-29 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 158 | 314 | 2.7E-39 | IPR011333 |
| SMART | SM00225 | BTB_4 | 189 | 284 | 5.2E-19 | IPR000210 |
| SMART | SM00061 | math_3 | 32 | 140 | 0.33 | IPR002083 |
| SMART | SM00061 | math_3 | 669 | 772 | 0.33 | IPR002083 |
| SMART | SM00061 | math_3 | 339 | 447 | 0.14 | IPR002083 |
| SMART | SM00225 | BTB_4 | 815 | 923 | 1.0E-20 | IPR000210 |
| SMART | SM00225 | BTB_4 | 501 | 603 | 1.5E-20 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 337 | 467 | 17.833992 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 664 | 789 | 9.472765 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 27 | 143 | 10.188711 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 501 | 562 | 16.07296 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 189 | 256 | 18.079113 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 815 | 885 | 15.597273 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_047063708.1 | BTB/POZ and MATH domain-containing protein 2-like [Lolium rigidum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D9ZQZ7 | BTB domain-containing protein OS=Oryza glumipatula OX=40148 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301057, Pt_Chr0301081 |