Basic Information
Locus ID:
Pt_Chr0301077
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 24601401 | 24604755 | + | Pt_Chr0301077 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 63,357.78 Da | 34.36 | 81.69 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 32 | 153 | 8.78899E-21 | IPR002083 |
| CDD | cd00121 | MATH | 263 | 386 | 2.10821E-16 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 410 | 485 | 9.5E-19 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 183 | 235 | 1.6E-9 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 28 | 165 | 3.43E-31 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 259 | 394 | 9.81E-25 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 406 | 487 | 7.26E-24 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 170 | 236 | 1.16E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 396 | 511 | 2.4E-26 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 512 | 570 | 2.4E-5 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 260 | 392 | 7.7E-21 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 160 | 250 | 1.2E-20 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 28 | 159 | 2.5E-25 | IPR008974 |
| SMART | SM00225 | BTB_4 | 419 | 510 | 1.2E-11 | IPR000210 |
| SMART | SM00225 | BTB_4 | 192 | 335 | 2.2 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 261 | 388 | 14.688943 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 192 | 238 | 11.067915 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 419 | 486 | 17.107059 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 29 | 155 | 19.291454 | IPR002083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_047069058.1 | BTB/POZ and MATH domain-containing protein 2-like [Lolium rigidum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0KVI1 | BTB domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology