Basic Information
Locus ID:
Pt_Chr0301064
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 24299705 | 24300748 | - | Pt_Chr0301064 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 38,351.02 Da | 31.60 | 76.77 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 31 | 152 | 2.83397E-23 | IPR002083 |
| Pfam | PF00917 | MATH domain | 39 | 150 | 4.4E-5 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 178 | 287 | 7.4E-22 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 167 | 286 | 1.33E-28 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 26 | 159 | 1.19E-28 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 288 | 347 | 6.1E-19 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 28 | 156 | 8.3E-26 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 162 | 284 | 2.4E-33 | IPR011333 |
| SMART | SM00061 | math_3 | 33 | 138 | 5.4E-4 | IPR002083 |
| SMART | SM00225 | BTB_4 | 186 | 289 | 1.5E-17 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 28 | 157 | 16.657795 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 186 | 254 | 14.790675 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_044453884.1 | BTB/POZ and MATH domain-containing protein 2-like [Triticum aestivum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6DKW0 | Speckle-type POZ protein-like protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0301064 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G796900 |
| Poaceae | Triticum aestivum | 2 | TraesCS2A02G472600.1.cds1, TraesCS2D02G472200.1.cds1 |