Basic Information
Locus ID:
Pt_Chr0301059
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 24258462 | 24259256 | - | Pt_Chr0301059 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 29,026.65 Da | 39.58 | 69.09 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 24 | 145 | 2.93138E-18 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 164 | 261 | 5.1E-17 | IPR000210 |
| Pfam | PF00917 | MATH domain | 37 | 134 | 1.8E-4 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 17 | 155 | 1.8E-22 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 150 | 261 | 1.26E-18 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 150 | 263 | 8.0E-23 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 18 | 149 | 4.8E-22 | IPR008974 |
| SMART | SM00225 | BTB_4 | 172 | 261 | 3.0E-6 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 172 | 239 | 14.418399 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 19 | 147 | 15.507168 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051211888.1 | BTB/POZ and MATH domain-containing protein 2-like [Lolium perenne] | 0 |
| Q6YCH2 | TD and POZ domain-containing protein 4 OS=Mus musculus OX=10090 GN=Tdpoz4 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0Q3P6X9 | BTB domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100836208 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0198020.1.CDS1 |
| Poaceae | Lolium multiflorum | 8 | gene-QYE76_038198, gene-QYE76_046361, gene-QYE76_046362 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0301059 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G798200 |
| Poaceae | Triticum aestivum | 4 | TraesCS2B02G495900.1, TraesCS2B02G496000.1.cds1 ... |