Basic Information
Locus ID:
Pt_Chr0301057
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 24225424 | 24236189 | + | Pt_Chr0301057 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 87,536.39 Da | 37.89 | 81.05 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 303 | 398 | 2.72823E-9 | IPR002083 |
| CDD | cd00121 | MATH | 626 | 746 | 2.87526E-14 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 178 | 233 | 3.7E-10 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 432 | 534 | 1.1E-12 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 149 | 229 | 1.73E-12 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 420 | 563 | 1.19E-18 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 303 | 403 | 2.78E-13 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 622 | 748 | 1.39E-16 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 297 | 403 | 4.6E-12 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 406 | 564 | 2.5E-31 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 621 | 749 | 8.9E-16 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 139 | 250 | 2.4E-14 | IPR011333 |
| SMART | SM00225 | BTB_4 | 438 | 567 | 1.2E-9 | IPR000210 |
| SMART | SM00225 | BTB_4 | 167 | 281 | 13.0 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 178 | 228 | 9.330627 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 438 | 494 | 13.115434 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 621 | 745 | 8.986944 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_044320624.1 | BTB/POZ and MATH domain-containing protein 1-like [Triticum aestivum] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0KVI1 | BTB domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301057, Pt_Chr0301081 |