Basic Information
Locus ID:
Pt_Chr0300976
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 22374462 | 22382271 | - | Pt_Chr0300976 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 112,947.25 Da | 51.75 | 79.43 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 835 | 971 | 5.54825E-56 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 265 | 618 | 3.84759E-86 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 863 | 961 | 1.8E-12 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 753 | 781 | 1.7E-6 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 279 | 695 | 3.2E-68 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 253 | 618 | 9.25E-44 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 726 | 787 | 2.1E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 626 | 1018 | 1.01E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 633 | 745 | 2.7E-5 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 816 | 1012 | 6.1E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 492 | 631 | 3.5E-31 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 235 | 324 | 1.2E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 381 | 491 | 6.7E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 753 | 792 | 1.1E-7 | IPR013083 |
| SMART | SM00184 | ring_2 | 735 | 781 | 2.0E-5 | IPR001841 |
| SMART | SM00490 | helicmild6 | 878 | 961 | 1.2E-16 | IPR001650 |
| SMART | SM00487 | ultradead3 | 261 | 597 | 2.9E-23 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 735 | 782 | 11.264779 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 402 | 580 | 11.024651 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 854 | 1014 | 13.929777 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 759 | 768 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 39 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_047067708.1 | helicase-like transcription factor CHR28 isoform X2 [Lolium rigidum] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0Q3EAD5 | Helicase-like transcription factor CHR28 OS=Brachypodium distachyon OX=15368 GN=100833230 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology